Scientific Meeting for the Chromosome-centric Human Proteome Project (C-HPP)

July 11, 2013  CHROMOSOME-CENTRIC RESOURCES FOR KNOWLEDGE GENERATION

Chairs: Amos Bairoch, Andrey Lisitsa

15.00 – 15.30

Amos Bairoch   Swiss Institute of Bioinformatics, Geneva, Switzerland

NeXtProt: Helping the Proteomics community with a human protein knowledge platform

15.30 – 16.00

Alexey Nesvizhskii   University of Michigan, Ann Arbor, USA

Combined Transcriptome and proteome analysis: Methods and applications

16.00 – 16.30

Eugene Kolker   Seattle Children's Research Institute, USA

Customized MOPED for Chromosome-Centric Research:  Chromosome 18 case study

16.30 – 16.40

Break

16.40 -17.00

Ancha Baranova   Research Center for Medical Genetics RAMS, Moscow; School of Systems Biology, College of Science, George Mason University, Fairfax, VA, USA

All of it is Already there: Protein-centric analysis of publicly available PPI data for functionally diverse KCTD family as an example

17.00 - 17.20

Fedor Kolpakov   Institute of Systems Biology,  Russia

Analyses of RNA-seq Data for Prediction Translation Efficiency and Protein Quantity from Transcriptomics Data

17.20 -17.40

Elena Ponomarenko   Institute of Biomedical Chemistry, Moscow, Russia

Estimation of Protein Species Number for Mammalian, Insect, Yeast and Bacteria

17.40 -18.00

Andrey Lisitsa   Institute of Biomedical Chemistry, Moscow, Russia

Consolidating Chr 18 Data Using Knowledgebase of Protein and Transcript Annotations

POSTER SESSION

 

Svetlana Novikova   Institute of Biomedical Chemistry, Moscow, Russia

Combined proteome and transcriptome analysis of leukemia HL60 cell differentiation

 

Ekaterina Poverennaya   Institute of Biomedical Chemistry, Moscow, Russia

Chromosome-centered interactome of human chromosome 18 by analysis of GPMDB datasets

 

Ekaterina Ilgisonis   Institute of Biomedical Chemistry, Moscow, Russia

MRM spectrum library of the chromosome 18

 

Ilya Toropygin   Institute of Biomedical Chemistry, Moscow, Russia

The use of peptide probes to profile protease activity in cancer and non-cancer sera

 

Joaquim Abian   Universitat Autònoma de Barcelona, Spain

Human primary T-cells Chromosome 16 phosphoproteome

 

Yuri Ivanov   Institute of Biomedical Chemistry, Moscow, Russia

Atomic force microscopy fishing and mass spectrometry identification of gp120 on immobilized aptamer

 

Sergey Radko   Institute of Biomedical Chemistry, Moscow, Russia

Aptamer multimeric constructs as synthetic capture reagents with the enhanced affinity for proteomic studies